North American Journal of Medical Sciences

TECHNICAL ARTICLE
Year
: 2011  |  Volume : 3  |  Issue : 10  |  Page : 478--485

Comparison of real-time SYBR green dengue assay with real-time taqman RT-PCR dengue assay and the conventional nested PCR for diagnosis of primary and secondary dengue infection


Damodar Paudel1, Richard Jarman2, Kriengsak Limkittikul3, Chonticha Klungthong2, Supat Chamnanchanunt5, Ananda Nisalak2, Robert Gibbons2, Watcharee Chokejindachai3 
1 Department of Internal Medicine Nepal Police Hospital, Maharagjung, Kathmandu, Nepal; Department of Clinical Tropical Medicine, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
2 Department of Virology, USAMC-AFRIMS, Bangkok, Thailand
3 Department of Tropical Pediatrics, Faculty of Tropical Medicine; Center for Emerging and Neglected Infectious Diseases, Mahidol University, Bangkok, Thailand

Correspondence Address:
Watcharee Chokejindachai
Department of Tropical Pediatrics, Faculty of Tropical Medicine, Mahidol University, 420/6 Ratchavithi Road, Ratchathewee, Bangkok, Thailand 10400

Background : Dengue fever and dengue hemorrhagic fever are caused by dengue virus. Dengue infection remains a burning problem of many countries. To diagnose acute dengue in the early phase we improve the low cost, rapid SYBR green real time assay and compared the sensitivity and specificity with real time Taqman® assay and conventional nested PCR assay. Aims: To develop low cost, rapid and reliable real time SYBR green diagnostic dengue assay and compare with Taqman real-time assay and conventional nested PCR (modified Lanciotti). Materials and Methods: Eight cultured virus strains were diluted in tenth dilution down to undetectable level by the PCR to optimize the primer, temperature (annealing, and extension and to detect the limit of detection of the assay. Hundred and ninety three ELISA and PCR proved dengue clinical samples were tested with real time SYBR® Green assay, real time Taqman® assay to compare the sensitivity and specificity. Results: Sensitivity and specificity of real time SYBR® green dengue assay (84% and 66%, respectively) was almost comparable to those (81% and 74%) of Taqman real time PCR dengue assay. Real time SYBR® green RT-PCR was equally sensitive in primary and secondary infection while real time Taqman was less sensitive in the secondary infection. Sensitivity of real time Taqman on DENV3 (87%) was equal to SYBR green real time PCR dengue assay. Conclusion: We developed low cost rapid diagnostic SYBR green dengue assay. Further study is needed to make duplex primer assay for the serotyping of dengue virus.


How to cite this article:
Paudel D, Jarman R, Limkittikul K, Klungthong C, Chamnanchanunt S, Nisalak A, Gibbons R, Chokejindachai W. Comparison of real-time SYBR green dengue assay with real-time taqman RT-PCR dengue assay and the conventional nested PCR for diagnosis of primary and secondary dengue infection.North Am J Med Sci 2011;3:478-485


How to cite this URL:
Paudel D, Jarman R, Limkittikul K, Klungthong C, Chamnanchanunt S, Nisalak A, Gibbons R, Chokejindachai W. Comparison of real-time SYBR green dengue assay with real-time taqman RT-PCR dengue assay and the conventional nested PCR for diagnosis of primary and secondary dengue infection. North Am J Med Sci [serial online] 2011 [cited 2019 Dec 14 ];3:478-485
Available from: http://www.najms.org/article.asp?issn=1947-2714;year=2011;volume=3;issue=10;spage=478;epage=485;aulast=Paudel;type=0